CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CBN23109
(
Caenorhabditis brenneri
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
CBN23109
T02148_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CBN23109
CCCH ZF
137
158
TCKNYLKGKCRFGDKCRFSHPV
Links
Other
CCCH ZF
family RBPs
Other
Caenorhabditis brenneri
RBPs
4 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CBG08548
Caenorhabditis briggsae
CBG08548
N
0.917
ccch-3
Caenorhabditis elegans
W05B10.2
N
0.917
CRE27455
Caenorhabditis remanei
CRE27455
N
0.917
CJA17607
Caenorhabditis japonica
CJA17607
N
0.875