CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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UNK
(
Echinops telfairi
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
ENSETEG00000019640
T02599_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSETEP00000015954
CCCH ZF
138
153
GNCTKNGLHCAFAHGP
ENSETEP00000015954
CCCH ZF
295
321
YKSTKCNDMQQSGSCPRGPFCAFAHIE
Links
Other
CCCH ZF
family RBPs
Other
Echinops telfairi
RBPs
7 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
RGD1565247
Rattus norvegicus
ENSRNOG00000017598
N
0.844
UNKL
Tursiops truncatus
ENSTTRG00000011985
N
0.822
UNKL
Gorilla gorilla
ENSGGOG00000014915
N
0.822
UNKL
Homo sapiens
ENSG00000059145
N
0.822
XR_022366.1
Pan troglodytes
ENSPTRG00000007591
N
0.822
UNKL
Takifugu rubripes
ENSTRUG00000012086
N
0.800
amel4_ncbi_hmm89035
Apis mellifera
amel4_ncbi_hmm89035
N
0.733