CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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UNKL
(
Gorilla gorilla
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
ENSGGOG00000014915
T02767_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSGGOP00000014557
CCCH ZF
215
232
ARGHCVKNGLHCAFAHGP
ENSGGOP00000014557
CCCH ZF
470
496
YKSTKCNDMRQTGYCPRGPFCAFAHVE
ENSGGOP00000025433
CCCH ZF
81
105
VYCSKYNEATGVCPDGDECPYLHRT
ENSGGOP00000025433
CCCH ZF
288
314
YKSTKCNDMRQTGYCPRGPFCAFAHVE
Links
Other
CCCH ZF
family RBPs
Other
Gorilla gorilla
RBPs
62 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
XR_022366.1
Pan troglodytes
ENSPTRG00000007591
N
1.000
UNKL
Homo sapiens
ENSG00000059145
N
1.000
UNKL
Callithrix jacchus
ENSCJAG00000013151
N
0.981
ENSPPYG00000006950
Pongo pygmaeus
ENSPPYG00000006950
N
0.981
RGD1565247
Rattus norvegicus
ENSRNOG00000017598
N
0.978
UNKL
Takifugu rubripes
ENSTRUG00000012086
N
0.956
UNKL
Tursiops truncatus
ENSTTRG00000011985
N
0.956
UNKL
Cavia porcellus
ENSCPOG00000011846
N
0.942
UNKL
Loxodonta africana
ENSLAFG00000018262
N
0.942
LOC100067623
Equus caballus
ENSECAG00000010641
N
0.923
UNKL
Bos taurus
ENSBTAG00000014126
N
0.923
Unkl
Mus musculus
ENSMUSG00000015127
N
0.904
UNKL
Monodelphis domestica
ENSMODG00000016188
N
0.904
UNKL
Oryzias latipes
ENSORLG00000005070
N
0.885
UNKL
Danio rerio
ENSDARG00000037838
N
0.885
UNKL
Meleagris gallopavo
ENSMGAG00000006920
N
0.865
UNKL
Gallus gallus
ENSGALG00000006450
N
0.865
UNK
Gasterosteus aculeatus
ENSGACG00000005102
N
0.846
UNKL
Tetraodon nigroviridis
ENSTNIG00000018588
N
0.827
UNK
Echinops telfairi
ENSETEG00000019640
N
0.822
A1A4K6_BOVIN
Bos taurus
ENSBTAG00000016287
N
0.808
UNK
Equus caballus
ENSECAG00000024672
N
0.808
UNK_CANFA
Canis familiaris
ENSCAFG00000004925
N
0.808
Unk
Dipodomys ordii
ENSDORG00000008133
N
0.808
UNK
Cavia porcellus
ENSCPOG00000012679
N
0.808
LOC100390502
Callithrix jacchus
ENSCJAG00000014056
N
0.808
AAH46725
Xenopus laevis
AAH46725
N
0.808
UNK
Spermophilus tridecemlineatus
ENSSTOG00000013344
N
0.808
UNK
Procavia capensis
ENSPCAG00000004504
N
0.808
ENSPPYG00000008637
Pongo pygmaeus
ENSPPYG00000008637
N
0.808
UNK
Homo sapiens
ENSG00000132478
N
0.808
UNK
Oryctolagus cuniculus
ENSOCUG00000014994
N
0.808
UNK
Macaca mulatta
ENSMMUG00000013646
N
0.808
UNK
Felis catus
ENSFCAG00000005757
N
0.808
UNK
Loxodonta africana
ENSLAFG00000022662
N
0.808
UNK
Sus scrofa
ENSSSCG00000017201
N
0.808
UNK
Pan troglodytes
ENSPTRG00000009656
N
0.808
UNK
Gorilla gorilla
ENSGGOG00000009203
N
0.808
UNK
Pteropus vampyrus
ENSPVAG00000008460
N
0.808
UNK
Myotis lucifugus
ENSMLUG00000015453
N
0.808
amel4_ncbi_hmm89035
Apis mellifera
amel4_ncbi_hmm89035
N
0.800
UNK
Gallus gallus
ENSGALG00000002278
N
0.788
unk
Xenopus tropicalis
ENSXETG00000012578
N
0.788
UNK
Takifugu rubripes
ENSTRUG00000007192
N
0.788
UNK
Tursiops truncatus
ENSTTRG00000015890
N
0.788
UNK
Anolis carolinensis
ENSACAG00000007303
N
0.788
UNK
Taeniopygia guttata
ENSTGUG00000008279
N
0.788
D4A564_RAT
Rattus norvegicus
ENSRNOG00000006600
N
0.788
Unk
Mus musculus
ENSMUSG00000020770
N
0.788
UNK
Meleagris gallopavo
ENSMGAG00000004713
N
0.788
SNAPOd2T00019464001
Oikopleura dioica
SNAPOd2T00019464001
N
0.788
UNK
Macropus eugenii
ENSMEUG00000004094
N
0.788
Ame_R007986
Ailuropoda melanoleuca
Ame_R007986
N
0.788
UNK
Monodelphis domestica
ENSMODG00000007684
N
0.788
estExt_Genewise1.C_sca_750115
Lottia gigantea
estExt_Genewise1.C_sca_750115
N
0.788
e_gw.394.2.1
Branchiostoma floridae
e_gw.394.2.1
N
0.769
AGAP000684
Anopheles gambiae
AGAP000684
N
0.769
unk
Danio rerio
ENSDARG00000000935
N
0.750
AAEL012456
Aedes aegypti
AAEL012456
N
0.750
PHUM219250
Pediculus humanus
PHUM219250
N
0.731
UNK
Ochotona princeps
ENSOPRG00000012784
N
0.731
188708
Helobdella robusta
188708
N
0.712