CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CPSF4L
(
Monodelphis domestica
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
ENSMODG00000025672
T02977_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMODP00000038500
CCCH ZF
32
57
SGVAVCTFFLKGFCEKGQLCPFRHDD
ENSMODP00000038500
CCCH ZF
59
83
EKTVVCKHWLRGLCKKSDHCKFLHQ
ENSMODP00000038500
CCCH ZF
87
112
TKMPECYFYSKFGECSNKECLFLHAD
ENSMODP00000038500
CCCH ZF
115
140
FKIRDCPWYDQGFCKYGLLCKFRHTR
ENSMODP00000038500
CCCH ZF
139
160
TRRVLCTNYLVGFCPEGPDCKF
Links
Other
CCCH ZF
family RBPs
Other
Monodelphis domestica
RBPs
11 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CPSF4L
Homo sapiens
ENSG00000187959
N
0.762
CPSF4L
Gorilla gorilla
ENSGGOG00000026659
N
0.762
CPSF4
Echinops telfairi
ENSETEG00000002608
N
0.724
CPSF4
Felis catus
ENSFCAG00000015070
N
0.715
CPSF4
Callithrix jacchus
ENSCJAG00000015826
N
0.715
CPSF4
Tursiops truncatus
ENSTTRG00000003007
N
0.715
Ame_R012658
Ailuropoda melanoleuca
Ame_R012658
N
0.715
Cpsf4
Mus musculus
ENSMUSG00000029625
N
0.715
CPSF4_RAT
Rattus norvegicus
ENSRNOG00000000985
N
0.715
CPSF4L
Loxodonta africana
ENSLAFG00000010697
N
0.700
CPSF4L
Oryctolagus cuniculus
ENSOCUG00000026495
N
0.700