Cpsf4 (Mus musculus)
CCCH ZF,CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00098 (zf-CCHC) 		IPR000571
IPR001878 		ENSMUSG00000029625 T00071_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSMUSP00000069243 CCCH ZF 36 60
ENSMUSP00000069243 CCCH ZF 63 88
ENSMUSP00000069243 CCCH ZF 91 109
ENSMUSP00000069243 CCCH ZF 111 136
ENSMUSP00000069243 CCHC ZF 185 202
ENSMUSP00000106276 CCCH ZF 36 60
ENSMUSP00000106276 CCCH ZF 63 88
ENSMUSP00000106276 CCCH ZF 91 116
ENSMUSP00000106276 CCCH ZF 119 140
ENSMUSP00000106276 CCCH ZF 143 168
ENSMUSP00000124899 CCCH ZF 36 60
ENSMUSP00000124899 CCCH ZF 63 88
ENSMUSP00000124899 CCCH ZF 91 116
ENSMUSP00000124899 CCCH ZF 119 140
ENSMUSP00000124899 CCCH ZF 143 168
ENSMUSP00000124899 CCHC ZF 217 234
ENSMUSP00000124966 CCCH ZF 36 60
ENSMUSP00000124966 CCCH ZF 63 88
ENSMUSP00000124966 CCCH ZF 91 116
ENSMUSP00000124966 CCCH ZF 119 140
ENSMUSP00000124966 CCCH ZF 143 168
ENSMUSP00000124966 CCHC ZF 218 235
ENSMUSP00000125019 CCCH ZF 36 60
ENSMUSP00000125019 CCCH ZF 63 88
ENSMUSP00000125019 CCCH ZF 91 116
ENSMUSP00000125019 CCCH ZF 119 140
ENSMUSP00000125019 CCCH ZF 143 168
ENSMUSP00000125019 CCHC ZF 243 260
ENSMUSP00000125640 CCCH ZF 4 28
ENSMUSP00000125640 CCCH ZF 31 56
ENSMUSP00000125640 CCCH ZF 59 84
ENSMUSP00000125640 CCCH ZF 87 108
ENSMUSP00000125640 CCCH ZF 111 136

Links

Other CCCH ZF,CCHC ZF family RBPs
Other Mus musculus RBPs

46 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CPSF4 Canis familiaris ENSCAFG00000015036 N 1.000
CPSF4 Cavia porcellus ENSCPOG00000001783 N 1.000
CPSF4_BOVIN Bos taurus ENSBTAG00000002090 N 1.000
Ame_R012658 Ailuropoda melanoleuca Ame_R012658 N 1.000
CPSF4 Tursiops truncatus ENSTTRG00000003007 N 1.000
LOC100059364 Equus caballus ENSECAG00000007525 N 1.000
CPSF4 Homo sapiens ENSG00000160917 N 1.000
CPSF4 Macaca mulatta ENSMMUG00000019191 N 1.000
CPSF4 Monodelphis domestica ENSMODG00000001367 N 1.000
CPSF4 Microcebus murinus ENSMICG00000017429 N 1.000
CPSF4 Macropus eugenii ENSMEUG00000006955 N 1.000
CPSF4 Gorilla gorilla ENSGGOG00000015131 N 1.000
CPSF4 Loxodonta africana ENSLAFG00000000159 N 1.000
CPSF4 Callithrix jacchus ENSCJAG00000015826 N 1.000
CPSF4 Felis catus ENSFCAG00000015070 N 1.000
CPSF4 Oryctolagus cuniculus ENSOCUG00000002437 N 1.000
CPSF4 Sorex araneus ENSSARG00000012416 N 1.000
CPSF4 Sus scrofa ENSSSCG00000007615 N 1.000
CPSF4_RAT Rattus norvegicus ENSRNOG00000000985 N 1.000
CPSF4 Pan troglodytes ENSPTRG00000019453 N 1.000
CPSF4 Ochotona princeps ENSOPRG00000013663 N 1.000
CPSF4 Ornithorhynchus anatinus ENSOANG00000007729 N 1.000
ENSPPYG00000017378 Pongo pygmaeus ENSPPYG00000017378 N 0.993
CPSF4 Gallus gallus ENSGALG00000004714 N 0.993
Cpsf4 Dipodomys ordii ENSDORG00000000742 N 0.993
CPSF4 Meleagris gallopavo ENSMGAG00000004235 N 0.993
CPSF4 Otolemur garnettii ENSOGAG00000010884 N 0.986
Q6DJP7 Xenopus laevis Q6DJP7 N 0.979
CPSF4 Anolis carolinensis ENSACAG00000012941 N 0.979
cpsf4 Xenopus tropicalis ENSXETG00000009892 N 0.979
Cpsf4 Rattus norvegicus ENSRNOG00000025217 N 0.979
AAH75128 Xenopus laevis AAH75128 N 0.979
CPSF4 Echinops telfairi ENSETEG00000002608 N 0.960
CPSF4 Oryzias latipes ENSORLG00000013743 N 0.944
CPSF4 Takifugu rubripes ENSTRUG00000003524 N 0.923
CPSF4 Tetraodon nigroviridis ENSTNIG00000006265 N 0.923
ENSTSYG00000008195 Tarsius syrichta ENSTSYG00000008195 N 0.912
cpsf4l Xenopus tropicalis ENSXETG00000004641 N 0.818
gw.91.110.1 Nematostella vectensis gw.91.110.1 N 0.794
CPSF4 Tupaia belangeri ENSTBEG00000011406 N 0.783
PHUM519380 Pediculus humanus PHUM519380 N 0.780
fgeneshTA2_pg.C_scaffold_2000799 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_2000799 N 0.760
BGIBMGA011920 Bombyx mori BGIBMGA011920 N 0.758
CPSF4L Monodelphis domestica ENSMODG00000025672 N 0.715
CPSF4L Loxodonta africana ENSLAFG00000010697 N 0.703