CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
TOE1
(
Oryzias latipes
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
ENSORLG00000012609
T03144_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSORLP00000015792
CCCH ZF
294
320
EQTEVCQRFSAFGWCPNGTKCPLSHDT
Links
Other
CCCH ZF
family RBPs
Other
Oryzias latipes
RBPs
3 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
TOE1
Gasterosteus aculeatus
ENSGACG00000014339
N
0.741
TOE1
Takifugu rubripes
ENSTRUG00000004628
N
0.741
TOE1
Tetraodon nigroviridis
ENSTNIG00000017614
N
0.704