CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
TOE1
(
Takifugu rubripes
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
ENSTRUG00000004628
T03522_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTRUP00000011003
CCCH ZF
265
290
ETDLCQQFSAFGWCPNGSQCPLSHDT
Links
Other
CCCH ZF
family RBPs
Other
Takifugu rubripes
RBPs
3 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
TOE1
Tetraodon nigroviridis
ENSTNIG00000017614
N
0.852
TOE1
Oryzias latipes
ENSORLG00000012609
N
0.741
TOE1
Gasterosteus aculeatus
ENSGACG00000014339
N
0.741