ENSTNIG00000016608 (Tetraodon nigroviridis)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 ENSTNIG00000016608 T03503_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000001769 CCCH ZF 102 125
ENSTNIP00000001769 CCCH ZF 131 156
ENSTNIP00000001769 CCCH ZF 158 180
ENSTNIP00000019713 CCCH ZF 222 245
ENSTNIP00000019713 CCCH ZF 251 276
ENSTNIP00000019713 CCCH ZF 279 301

Links

Other CCCH ZF family RBPs
Other Tetraodon nigroviridis RBPs

38 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSTRUG00000012901 Takifugu rubripes ENSTRUG00000012901 N 0.986
ZC3H4 Oryzias latipes ENSORLG00000011179 N 0.932
ENSGACG00000005343 Gasterosteus aculeatus ENSGACG00000005343 N 0.892
CABZ01077452.1 Danio rerio ENSDARG00000075165 N 0.853
ZC3H6 Ochotona princeps ENSOPRG00000012717 N 0.792
ZC3H6 Procavia capensis ENSPCAG00000015468 N 0.789
ZC3H6 Dasypus novemcinctus ENSDNOG00000000253 N 0.789
ZC3H6 Loxodonta africana ENSLAFG00000001151 N 0.782
Ame_R012775 Ailuropoda melanoleuca Ame_R012775 N 0.779
ZC3H6 Oryctolagus cuniculus ENSOCUG00000011125 N 0.779
Zc3h6 Mus musculus ENSMUSG00000042851 N 0.776
ZC3H6 Sus scrofa ENSSSCG00000008096 N 0.769
ZC3H6 Homo sapiens ENSG00000188177 N 0.769
ZC3H6 Pan troglodytes ENSPTRG00000012363 N 0.769
ZC3H6 Gorilla gorilla ENSGGOG00000001665 N 0.769
ZC3H6 Tursiops truncatus ENSTTRG00000013154 N 0.769
ZC3H6 Bos taurus ENSBTAG00000020646 N 0.769
ZC3H6 Tarsius syrichta ENSTSYG00000006672 N 0.769
ZC3H6 Canis familiaris ENSCAFG00000007160 N 0.769
ZC3H6 Vicugna pacos ENSVPAG00000005912 N 0.769
ZC3H6 Callithrix jacchus ENSCJAG00000016479 N 0.769
ZC3H6 Ornithorhynchus anatinus ENSOANG00000012054 N 0.756
ZC3H6 Pteropus vampyrus ENSPVAG00000013728 N 0.756
zc3h6 Xenopus tropicalis ENSXETG00000013762 N 0.756
Zc3h6 Dipodomys ordii ENSDORG00000013967 N 0.756
ZC3H6 Sorex araneus ENSSARG00000001035 N 0.753
ZC3H6 Tupaia belangeri ENSTBEG00000016232 N 0.740
ZC3H6 Spermophilus tridecemlineatus ENSSTOG00000008120 N 0.740
ZC3H6 Otolemur garnettii ENSOGAG00000002556 N 0.740
ZC3H6 Macaca mulatta ENSMMUG00000016430 N 0.740
ZC3H8 Taeniopygia guttata ENSTGUG00000007468 N 0.737
Zc3h6 Rattus norvegicus ENSRNOG00000026277 N 0.733
ZC3H6 Gallus gallus ENSGALG00000008269 N 0.731
ZC3H6 Meleagris gallopavo ENSMGAG00000003025 N 0.731
ZC3H6 Myotis lucifugus ENSMLUG00000004896 N 0.714
ZC3H6 Anolis carolinensis ENSACAG00000005815 N 0.714
ZC3H8 Vicugna pacos ENSVPAG00000005911 N 0.707