CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Mkrn1
(
Drosophila melanogaster
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
FBgn0029152
T03667_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0078038
CCCH ZF
19
43
SQTICRYYVRGICRFGELCRFSHDL
FBpp0078038
CCCH ZF
298
324
GAKDCKYFKKGEGKCPFGNKCFYKHAL
FBpp0078039
CCCH ZF
19
43
SQTICRYYVRGICRFGELCRFSHDL
FBpp0078039
CCCH ZF
298
324
GAKDCKYFKKGEGKCPFGNKCFYKHAL
FBpp0293874
CCCH ZF
19
43
SQTICRYYVRGICRFGELCRFSHDL
FBpp0293874
CCCH ZF
298
324
GAKDCKYFKKGEGKCPFGNKCFYKHAL
FBpp0293875
CCCH ZF
19
43
SQTICRYYVRGICRFGELCRFSHDL
FBpp0293875
CCCH ZF
298
324
GAKDCKYFKKGEGKCPFGNKCFYKHAL
Links
Other
CCCH ZF
family RBPs
Other
Drosophila melanogaster
RBPs
7 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GD12110
Drosophila simulans
FBgn0183847
N
1.000
GE22322
Drosophila yakuba
FBgn0239546
N
1.000
GM22131
Drosophila sechellia
FBgn0177002
N
1.000
GG13225
Drosophila erecta
FBgn0105497
N
1.000
GF10705
Drosophila ananassae
FBgn0087746
N
0.981
GK20382
Drosophila willistoni
FBgn0222379
N
0.981