XM_002891370.1 (Arabidopsis lyrata)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 scaffold_104426.1 T04142_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
scaffold_104426.1 CCCH ZF 10 36
scaffold_104426.1 CCCH ZF 56 82

Links

Other CCCH ZF family RBPs
Other Arabidopsis lyrata RBPs

3 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AT1G48195 Arabidopsis thaliana AT1G48195-TAIR-G N 0.926
MDP0000157639 Malus x domestica MDP0000157639 N 0.759
cassava23590.valid.m1 Manihot esculenta cassava23590.valid.m1 N 0.704