cassava23590.valid.m1 (Manihot esculenta)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 cassava23590.valid.m1 T04765_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava23590.valid.m1 CCCH ZF 34 60
cassava23590.valid.m1 CCCH ZF 80 106

Links

Other CCCH ZF family RBPs
Other Manihot esculenta RBPs

7 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MDP0000157639 Malus x domestica MDP0000157639 N 0.815
gw1.6.198.1 Physcomitrella patens gw1.6.198.1 N 0.741
XM_002891370.1 Arabidopsis lyrata scaffold_104426.1 N 0.704
LOC_Os01g68860 Oryza sativa LOC_Os01g68860 N 0.704
ppa018470m Prunus persica ppa018470m N 0.704
gw1.6.197.1 Physcomitrella patens gw1.6.197.1 N 0.704
AT1G48195 Arabidopsis thaliana AT1G48195-TAIR-G N 0.704