CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PCHAS_082830
(
Plasmodium chabaudi
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
PCHAS_082830
T04411_0.6
EuPathDB (2010-Sep-21)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PCHAS_082830
CCCH ZF
3
28
YKTQLCSFYAKGICARGNKCSWAHGE
PCHAS_082830
CCCH ZF
38
63
YKTRMCYTFLSGSYCEASKCTFAHTE
PCHAS_082830
CCCH ZF
72
97
ALRLCTKYFLDGYCSKADKCPMAHSI
Links
Other
CCCH ZF
family RBPs
Other
Plasmodium chabaudi
RBPs
3 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PBANKA_082800
Plasmodium berghei
PBANKA_082800
N
1.000
PKH_072500
Plasmodium knowlesi
PKH_072500
N
0.974
PFI1335w
Plasmodium falciparum
PFI1335w
N
0.923