CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PKH_072500
(
Plasmodium knowlesi
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
PKH_072500
T04432_0.6
EuPathDB (2010-Sep-21)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PKH_072500
CCCH ZF
3
28
YKTQLCSFYAKGICARGNKCSWAHGE
PKH_072500
CCCH ZF
38
63
YKTRMCYTFLSGSYCEASKCTFAHTE
PKH_072500
CCCH ZF
72
97
ALRLCTKYFLDGYCAKADKCPMAHNI
Links
Other
CCCH ZF
family RBPs
Other
Plasmodium knowlesi
RBPs
3 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PBANKA_082800
Plasmodium berghei
PBANKA_082800
N
0.974
PCHAS_082830
Plasmodium chabaudi
PCHAS_082830
N
0.974
PFI1335w
Plasmodium falciparum
PFI1335w
N
0.923