CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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TvY486_0501070
(
Trypanosoma vivax
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
TvY486_0501070
T04601_0.6
EuPathDB (2010-Sep-21)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
TvY486_0501070
CCCH ZF
15
41
YKTSLCSFFVDQIGCPFGERCAFAHGE
Links
Other
CCCH ZF
family RBPs
Other
Trypanosoma vivax
RBPs
6 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
TcIL3000.0.49340
Trypanosoma congolense
TcIL3000.0.49340
N
0.815
TcIL3000.5.1510
Trypanosoma congolense
TcIL3000.5.1510
N
0.815
LmxM15.0160
Leishmania mexicana
LmxM15.0160
N
0.741
LmjF15.0160
Leishmania major
LmjF15.0160
N
0.741
LinJ15_V3.0160
Leishmania infantum
LinJ15_V3.0160
N
0.741
LbrM15_V2.0150
Leishmania braziliensis
LbrM15_V2.0150
N
0.741