CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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SNAPOd2T00019452001
(
Oikopleura dioica
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
SNAPOd2T00019452001
T04633_0.6
Genoscope (2013-Jan-11)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
SNAPOd2T00019452001
CCCH ZF
10
36
YKTELCRSWDDTGFCRYGKKCQFAHSQ
SNAPOd2T00019452001
CCCH ZF
48
74
YKTEMCDSFHTVGVCPYGNRCHFVHND
Links
Other
CCCH ZF
family RBPs
Other
Oikopleura dioica
RBPs
7 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
fgenesh2_pg.scaffold_13000206
Monosiga brevicollis
fgenesh2_pg.scaffold_13000206
N
0.741
ZFP36
Takifugu rubripes
ENSTRUG00000002023
I
0.722
AMAG_15989
Allomyces macrogynus
AMAG_15989
N
0.722
AMAG_06814
Allomyces macrogynus
AMAG_06814
N
0.722
EFA80829.1
Polysphondylium pallidum
EFA80829.1
I
0.704
SPPG_04528
Spizellomyces punctatus
SPPG_04528
N
0.704
ZFP36
Gasterosteus aculeatus
ENSGACG00000008344
I
0.704