EFA80829.1 (Polysphondylium pallidum)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 EFA80829.1 T05756_0.6 NCBI (2013-Jan-11)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ZFP36
M264_0.6 		Homo sapiens Sequence logo not available HCYUBY RIP-chip
Cook et al.(2011)
193_18367721.1 		0.704
ZFP36
M263_0.6 		Homo sapiens Sequence logo not available AAUAA RIP-chip
Cook et al.(2011)
193_18367721 		0.704
ZFP36
M350_0.6 		Homo sapiens UUAUUUAWW SELEX
Cook et al.(2011)
951_12324455 		0.704
ZFP36
M269_0.6 		Homo sapiens UUAUUUAWW SELEX
Cook et al.(2011)
221_12324455 		0.704
ZFP36
M268_0.6 		Homo sapiens Sequence logo not available AUUUA RIP-chip
Cook et al.(2011)
194_18256032.1 		0.704
ZFP36
M267_0.6 		Homo sapiens Sequence logo not available UUAUUUAUU RIP-chip
Cook et al.(2011)
194_18256032 		0.704
ZFP36
M266_0.6 		Homo sapiens Sequence logo not available UUGUGS RIP-chip
Cook et al.(2011)
193_18367721.3 		0.704
ZFP36
M265_0.6 		Homo sapiens Sequence logo not available CUUGU RIP-chip
Cook et al.(2011)
193_18367721.2 		0.704
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
EFA80829.1 CCCH ZF 153 179
EFA80829.1 CCCH ZF 191 217

Links

Other CCCH ZF family RBPs
Other Polysphondylium pallidum RBPs

159 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
DDB_G0285973 Dictyostelium discoideum DDB_G0285973 I 0.852
estExt_fgeneshDP_kg.C_230001 Dictyostelium purpureum estExt_fgeneshDP_kg.C_230001 I 0.833
EHI_008770 Entamoeba histolytica EHI_008770 N 0.778
EDI_287240 Entamoeba dispar EDI_287240 N 0.778
0300010273 Ostreococcus tauri 0300010273 I 0.778
EIN_295900 Entamoeba invadens EIN_295900 N 0.759
fgeneshCV_pg.C_scaffold_14000116 Chlorella vulgaris fgeneshCV_pg.C_scaffold_14000116 I 0.759
CMA121C Cyanidioschyzon merolae CMA121C N 0.759
gw1.1.1133.1 Micromonas pusilla gw1.1.1133.1 N 0.759
gwEuk.3.753.1 Ostreococcus lucimarinus gwEuk.3.753.1 I 0.759
gw1.3.668.1 Ostreococcus RCC809 gw1.3.668.1 I 0.741
gw1.8.374.1 Chlorella NC64A gw1.8.374.1 N 0.741
Zfp36l3 Rattus norvegicus ENSRNOG00000029788 I 0.741
fgenesh2_pg.C_scaffold_32000041 Selaginella moellendorfii fgenesh2_pg.C_scaffold_32000041 N 0.741
e_gw1.45.79.1 Selaginella moellendorfii e_gw1.45.79.1 N 0.741
Zfp36l3 Mus musculus ENSMUSG00000059334 I 0.741
XR_022888.1 Pan troglodytes ENSPTRG00000030712 I 0.722
ZFP36L1 Pteropus vampyrus ENSPVAG00000011686 I 0.722
ZFP36L2 Pan troglodytes ENSPTRG00000011870 I 0.722
ENSPPYG00000012458 Pongo pygmaeus ENSPPYG00000012458 I 0.722
ENSPPYG00000005933 Pongo pygmaeus ENSPPYG00000005933 I 0.722
Zfp36l2 Rattus norvegicus ENSRNOG00000005067 I 0.722
ZFP36L2 Gorilla gorilla ENSGGOG00000001402 I 0.722
ENSSSCG00000008460 Sus scrofa ENSSSCG00000008460 I 0.722
ZFP36L1 Sus scrofa ENSSSCG00000002302 I 0.722
TISB_RAT Rattus norvegicus ENSRNOG00000030024 I 0.722
ENSGACG00000013400 Gasterosteus aculeatus ENSGACG00000013400 I 0.722
ZFP36L1 Procavia capensis ENSPCAG00000005383 I 0.722
ZFP36L1 Oryzias latipes ENSORLG00000011106 I 0.722
ZFP36L1 Loxodonta africana ENSLAFG00000028594 I 0.722
ZFP36L2 Myotis lucifugus ENSMLUG00000015588 I 0.722
ZFP36L2 Microcebus murinus ENSMICG00000010318 I 0.722
ZFP36L1 Macropus eugenii ENSMEUG00000003070 I 0.722
ZFP36L2 Loxodonta africana ENSLAFG00000004265 I 0.722
Zfp36l1 Mus musculus ENSMUSG00000021127 I 0.722
ZFP36L1 Oryctolagus cuniculus ENSOCUG00000003168 I 0.722
ZFP36L2 Ornithorhynchus anatinus ENSOANG00000002848 I 0.722
ZFP36L2 Sus scrofa ENSSSCG00000008461 I 0.722
Zfp36l2 Mus musculus ENSMUSG00000045817 I 0.722
ZFP36L2 Macropus eugenii ENSMEUG00000010649 I 0.722
ZFP36L1 Taeniopygia guttata ENSTGUG00000011494 I 0.722
gw1.30.59.1 Lottia gigantea gw1.30.59.1 N 0.722
Aqu1.221345 Amphimedon queenslandica Aqu1.221345 I 0.722
ECU01_0830 Encephalitozoon cuniculi ECU01_0830 N 0.722
zfp36l1 Xenopus tropicalis ENSXETG00000016987 I 0.722
zfp36l2 Xenopus tropicalis ENSXETG00000009274 I 0.722
e_gw.346.37.1 Nematostella vectensis e_gw.346.37.1 I 0.722
estExt_fgenesh1_pm.C_10824 Schizophyllum commune estExt_fgenesh1_pm.C_10824 N 0.722
fgenesh1_pg.C_scaffold_4000193 Sporobolomyces roseus fgenesh1_pg.C_scaffold_4000193 N 0.722
estExt_fgenesh3_pg.C_770054 Postia placenta estExt_fgenesh3_pg.C_770054 N 0.722
estExt_fgenesh2_pg.C_680108 Branchiostoma floridae estExt_fgenesh2_pg.C_680108 I 0.722
estExt_fgenesh2_pg.C_10793 Laccaria bicolor estExt_fgenesh2_pg.C_10793 N 0.722
zfp36 Xenopus tropicalis ENSXETG00000002899 I 0.722
ZFP36L2 Tursiops truncatus ENSTTRG00000006356 I 0.722
ZFP36L1 Tetraodon nigroviridis ENSTNIG00000002277 I 0.722
ZFP36L2 Tetraodon nigroviridis ENSTNIG00000017103 I 0.722
ZFP36 Tetraodon nigroviridis ENSTNIG00000000183 I 0.722
fgenesh1_pg.C_scaffold_11000103 Phanerochaete chrysosporium fgenesh1_pg.C_scaffold_11000103 N 0.722
ZFP36L2 Tupaia belangeri ENSTBEG00000012370 I 0.722
ZFP36L1 Gasterosteus aculeatus ENSGACG00000011271 I 0.722
ZFP36 Takifugu rubripes ENSTRUG00000002023 I 0.722
ZFP36L1 Tursiops truncatus ENSTTRG00000003475 I 0.722
ZFP36L1 Tarsius syrichta ENSTSYG00000009284 I 0.722
ZFP36L1 Takifugu rubripes ENSTRUG00000012295 I 0.722
ZFP36L2 Takifugu rubripes ENSTRUG00000006923 I 0.722
ZFP36L1 Spermophilus tridecemlineatus ENSSTOG00000009758 I 0.722
ZFP36L2 Monodelphis domestica ENSMODG00000000407 I 0.722
A7MB98_BOVIN Bos taurus ENSBTAG00000025434 I 0.722
ZFP36L2 Canis familiaris ENSCAFG00000002438 I 0.722
Q1JP65_BOVIN Bos taurus ENSBTAG00000003553 I 0.722
ZFP36L2 Anolis carolinensis ENSACAG00000014740 I 0.722
ENSACAG00000005547 Anolis carolinensis ENSACAG00000005547 I 0.722
ZFP36L1 Canis familiaris ENSCAFG00000016497 I 0.722
AAH44086 Xenopus laevis AAH44086 I 0.722
ZFP36L2 Cavia porcellus ENSCPOG00000022038 I 0.722
AAD24208 Xenopus laevis AAD24208 I 0.722
LOC100405281 Callithrix jacchus ENSCJAG00000015116 I 0.722
LOC100386590 Callithrix jacchus ENSCJAG00000014571 I 0.722
AAH84197 Xenopus laevis AAH84197 I 0.722
ENSGACG00000008351 Gasterosteus aculeatus ENSGACG00000008351 I 0.722
AMAG_06814 Allomyces macrogynus AMAG_06814 N 0.722
Q805B4 Xenopus laevis Q805B4 I 0.722
Q7ZXW9 Xenopus laevis Q7ZXW9 I 0.722
BAC54909 Xenopus laevis BAC54909 I 0.722
AMAG_15989 Allomyces macrogynus AMAG_15989 N 0.722
CC1G_04402 Coprinopsis cinerea CC1G_04402 N 0.722
amel4_ncbi_hmm10964 Apis mellifera amel4_ncbi_hmm10964 I 0.722
AAH84221 Xenopus laevis AAH84221 I 0.722
SPPG_04528 Spizellomyces punctatus SPPG_04528 N 0.722
AAI00163 Xenopus laevis AAI00163 I 0.722
ZFP36L1 Cavia porcellus ENSCPOG00000025078 I 0.722
AAD24209 Xenopus laevis AAD24209 I 0.722
estExt_genemark.C_30534 Pleurotus ostreatus estExt_genemark.C_30534 N 0.722
CABZ01070258.1 Danio rerio ENSDARG00000040503 I 0.722
zfp36l2 Danio rerio ENSDARG00000021806 I 0.722
ZFP36L2 Homo sapiens ENSG00000152518 I 0.722
Ame_R004924 Ailuropoda melanoleuca Ame_R004924 I 0.722
ZFP36L1 Dasypus novemcinctus ENSDNOG00000005159 I 0.722
LOC100063597 Equus caballus ENSECAG00000018860 I 0.722
XP_782811.1 Strongylocentrotus purpuratus XP_782811.1 I 0.722
Zfp36l1 Dipodomys ordii ENSDORG00000008348 I 0.722
Ame_R000168 Ailuropoda melanoleuca Ame_R000168 I 0.722
XP_001175665.1 Strongylocentrotus purpuratus XP_001175665.1 I 0.722
zfp36l1a Danio rerio ENSDARG00000016154 I 0.722
ZFP36 Gasterosteus aculeatus ENSGACG00000008344 I 0.722
XP_001178437.1 Strongylocentrotus purpuratus XP_001178437.1 I 0.722
XP_001175810.1 Strongylocentrotus purpuratus XP_001175810.1 I 0.722
ZFP36L1 Homo sapiens ENSG00000185650 I 0.722
GG17735 Drosophila erecta FBgn0109957 N 0.704
Ame_R016002 Ailuropoda melanoleuca Ame_R016002 I 0.704
gw1.534.24.1 Capitella teleta gw1.534.24.1 I 0.704
GL13141 Drosophila persimilis FBgn0150747 N 0.704
GE17025 Drosophila yakuba FBgn0234511 N 0.704
GM11580 Drosophila sechellia FBgn0166523 N 0.704
Ein01_0730 Encephalitozoon intestinalis Ein01_0730 N 0.704
e_gw1.40.110.1 Trichoplax adhaerens e_gw1.40.110.1 I 0.704
au.g10607_t1 Chlamydomonas reinhardtii au.g10607_t1 N 0.704
GF21384 Drosophila ananassae FBgn0098386 N 0.704
XP_002159721.1 Hydra magnipapillata XP_002159721.1 N 0.704
AAD24207 Xenopus laevis AAD24207 I 0.704
gw1.14.301.1 Coccomyxa C 169 gw1.14.301.1 N 0.704
SNAPOd2T00019452001 Oikopleura dioica SNAPOd2T00019452001 N 0.704
estExt_fgenesh2_kg.C_10578 Serpula lacrymans estExt_fgenesh2_kg.C_10578 N 0.704
fgeneshNG_pg.scaffold_32000024 Naegleria gruberi fgeneshNG_pg.scaffold_32000024 N 0.704
AAH82435 Xenopus laevis AAH82435 I 0.704
fgenesh2_pg.scaffold_13000206 Monosiga brevicollis fgenesh2_pg.scaffold_13000206 N 0.704
e_gw1.1.2331.1 Agaricus bisporus e_gw1.1.2331.1 N 0.704
AAEL002308 Aedes aegypti AAEL002308 I 0.704
zfp36l1b Danio rerio ENSDARG00000021443 I 0.704
zgc:114130 Danio rerio ENSDARG00000040725 I 0.704
ZFP36 Oryctolagus cuniculus ENSOCUG00000003400 I 0.704
ENSORLG00000000589 Oryzias latipes ENSORLG00000000589 I 0.704
ENSCSAVG00000002923 Ciona savignyi ENSCSAVG00000002923 I 0.704
ENSORLG00000008378 Oryzias latipes ENSORLG00000008378 I 0.704
ZFP36 Danio rerio ENSDARG00000044395 I 0.704
ZFP36 Monodelphis domestica ENSMODG00000013494 I 0.704
ZFP36 Homo sapiens ENSG00000128016 D 0.704
ZFP36 Gorilla gorilla ENSGGOG00000014399 I 0.704
ZFP36 Macropus eugenii ENSMEUG00000010317 I 0.704
Zfp36 Dipodomys ordii ENSDORG00000013487 I 0.704
BGIBMGA008337 Bombyx mori BGIBMGA008337 I 0.704
ZFP36 Myotis lucifugus ENSMLUG00000002942 I 0.704
ZFP36L2 Procavia capensis ENSPCAG00000010765 I 0.704
ENSPPYG00000010577 Pongo pygmaeus ENSPPYG00000010577 I 0.704
ENSTNIG00000019802 Tetraodon nigroviridis ENSTNIG00000019802 I 0.704
CPIJ018734 Culex quinquefasciatus CPIJ018734 I 0.704
CpipJ_CPIJ018734 Culex pipiens CpipJ_CPIJ018734 I 0.704
ZFP36 Tursiops truncatus ENSTTRG00000003564 I 0.704
Tis11 Drosophila melanogaster FBgn0011837 N 0.704
AAI08849 Xenopus laevis AAI08849 I 0.704
ENSACAG00000009252 Anolis carolinensis ENSACAG00000009252 I 0.704
ZFP36 Tupaia belangeri ENSTBEG00000005948 I 0.704
ZFP36 Cavia porcellus ENSCPOG00000011363 I 0.704
ZFP36 Pan troglodytes ENSPTRG00000010968 I 0.704
ZFP36 Pteropus vampyrus ENSPVAG00000011124 I 0.704
LOC100397247 Callithrix jacchus ENSCJAG00000014156 I 0.704
ZFP36 Sus scrofa ENSSSCG00000010708 I 0.704
Q4H2G7_CIOIN Ciona intestinalis ENSCING00000014446 I 0.704
GA17935-RA Drosophila pseudoobscura FBgn0077944 N 0.704