CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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estExt_fgeneshPB_pg.C_150161
(
Phycomyces blakesleeanus
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
estExt_fgeneshPB_pg.C_150161
T05095_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_fgeneshPB_pg.C_150161
CCCH ZF
77
101
SHVPCKFFKQGTCTAGANCIFSHNA
estExt_fgeneshPB_pg.C_150161
CCCH ZF
105
128
SGSSVCKYFIKGNCKFGTKCALLH
Links
Other
CCCH ZF
family RBPs
Other
Phycomyces blakesleeanus
RBPs
4 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
gw1.2.2109.1
Mucor circinelloides
gw1.2.2109.1
N
0.837
orf19.7385
Candida albicans
orf19.7385
N
0.714
estExt_fgeneshTM_pg.C_60122
Tremella mesenterica
estExt_fgeneshTM_pg.C_60122
N
0.714
SJAG_01535
Schizosaccharomyces japonicus
SJAG_01535
N
0.700