EuGene.0400010508 (Ostreococcus RCC809)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 EuGene.0400010508 T05192_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
EuGene.0400010508 CCCH ZF 231 256

Links

Other CCCH ZF family RBPs
Other Ostreococcus RCC809 RBPs

14 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
estExt_fgenesh1_pg.C_Chr_04.00010028 Ostreococcus tauri estExt_fgenesh1_pg.C_Chr_04.00010028 N 0.846
estExt_fgenesh1_pg.C_Chr_40023 Ostreococcus lucimarinus estExt_fgenesh1_pg.C_Chr_40023 N 0.846
SB09G006050 Sorghum bicolor Sb09g006050 N 0.808
GSVIVG00035331001 Vitis vinifera GSVIVG00035331001 N 0.808
MDP0000501598 Malus x domestica MDP0000501598 N 0.769
ppa007432m Prunus persica ppa007432m N 0.769
MDP0000841002 Malus x domestica MDP0000841002 N 0.769
XM_002867375.1 Arabidopsis lyrata fgenesh2_kg.7__1270__AT4G29190.1 N 0.769
est_orfs.18_6698_4273011:2 Micromonas pusilla est_orfs.18_6698_4273011:2 N 0.731
SZF2 Arabidopsis thaliana AT2G40140-TAIR-G N 0.731
MDP0000588193 Malus x domestica MDP0000588193 N 0.731
ppa002415m Prunus persica ppa002415m N 0.731
ATSZF1 Arabidopsis thaliana AT3G55980-TAIR-G N 0.731
XM_002876298.1 Arabidopsis lyrata fgenesh2_kg.5__2030__AT3G55980.1 N 0.731