CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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mgf003715m
(
Mimulus guttatus
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
mgf003715m
T05612_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
mgf003715m
CCCH ZF
59
84
GKGVCNRFVRTGSCQYGDSCKYHHPN
Links
Other
CCCH ZF
family RBPs
Other
Mimulus guttatus
RBPs
5 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GSVIVG00031300001
Vitis vinifera
GSVIVG00031300001
N
0.852
PK09048.1
Cannabis sativa
PK09048.1
N
0.808
MDP0000145898
Malus x domestica
MDP0000145898
N
0.769
30128.m008963
Ricinus communis
30128.m008963
N
0.731
BRADI2G08905
Brachypodium distachyon
BRADI2G08905
N
0.731