CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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BRADI2G08905
(
Brachypodium distachyon
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
BRADI2G08905
T01982_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
BRADI2G08905.1
CCCH ZF
63
88
GKGVCNHFVRTGTCKFGDSCRYFHPK
Links
Other
CCCH ZF
family RBPs
Other
Brachypodium distachyon
RBPs
7 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
BGIOSIBCE001150
Oryza indica
BGIOSIBCE001150
N
0.846
SB03G009590
Sorghum bicolor
Sb03g009590
N
0.846
LOC_Os01g14870
Oryza sativa
LOC_Os01g14870
N
0.846
GRMZM2G024655
Zea mays
GRMZM2G024655
N
0.808
GSVIVG00031300001
Vitis vinifera
GSVIVG00031300001
N
0.778
PDK_20s1487951g001
Phoenix dactylifera
PDK_20s1487951g001
N
0.769
mgf003715m
Mimulus guttatus
mgf003715m
N
0.731