CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GRMZM2G336065
(
Zea mays
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
GRMZM2G336065
T05729_0.6
MaizeSequence (2009-Oct-16)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
GRMZM2G336065_P02
CCCH ZF
27
52
YKTKLCALWRGRGGCPRPNCGFAHGE
GRMZM2G336065_P03
CCCH ZF
27
52
YKTKLCALWRGRGGCPRPNCGFAHGE
GRMZM2G336065_P05
CCCH ZF
27
52
YKTKLCALWRGRGGCPRPNCGFAHGE
Links
Other
CCCH ZF
family RBPs
Other
Zea mays
RBPs
5 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GRMZM2G044398
Zea mays
GRMZM2G044398
N
1.000
SB10G027530
Sorghum bicolor
Sb10g027530
N
1.000
GRMZM2G119640
Zea mays
GRMZM2G119640
N
0.731
SB04G004243
Sorghum bicolor
Sb04g004243
N
0.731