CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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A7TDY4_VANPO
(
Vanderwaltozyma polyspora
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
A7TDY4_VANPO
T05914_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
A7TDY4
CCCH ZF
29
57
PDRPICEYYNGISADSCPRGNNCHKKHVL
A7TDY4
CCCH ZF
63
86
KIVCKHWLRGLCKKNDNCEYLHEY
A7TDY4
CCCH ZF
89
115
RKMPECVFFSKNGFCTQTPECQYLHID
A7TDY4
CCCH ZF
119
138
RIEKCSNYETGYCPLGPACT
A7TDY4
CCCH ZF
144
167
KNICPRYLTGFCPLGKSCDMAHPT
Links
Other
CCCH ZF
family RBPs
Other
Vanderwaltozyma polyspora
RBPs
1 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ZYRO0C17776g
Zygosaccharomyces rouxii
ZYRO0C17776g
N
0.701