CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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LjSGA_008412.1
(
Lotus japonicus
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
LjSGA_008412.1
T06261_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LjSGA_008412.1
CCCH ZF
89
115
PDEADCIYYLRTGYCGYGSRCRFNHPR
LjSGA_008412.1
CCCH ZF
135
160
GQPVCQYYMRTGSCKCGSSCKYHHPR
LjSGA_008412.1
CCCH ZF
180
206
MGQKECSYYVKTGQCKFGATCKFHHPQ
Links
Other
CCCH ZF
family RBPs
Other
Lotus japonicus
RBPs
2 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GRMZM2G086994
Zea mays
GRMZM2G086994
N
0.765
GRMZM2G475017
Zea mays
GRMZM2G475017
N
0.728