GRMZM2G475017 (Zea mays)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 GRMZM2G475017 T05734_0.6 MaizeSequence (2009-Oct-16)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
GRMZM2G475017_P01 CCCH ZF 42 68
GRMZM2G475017_P01 CCCH ZF 89 115
GRMZM2G475017_P01 CCCH ZF 133 159
GRMZM2G475017_P01 CCCH ZF 287 313
GRMZM2G475017_P01 CCCH ZF 333 359
GRMZM2G475017_P02 CCCH ZF 21 41
GRMZM2G475017_P02 CCCH ZF 59 85
GRMZM2G475017_P02 CCCH ZF 213 239
GRMZM2G475017_P02 CCCH ZF 259 285
GRMZM2G475017_P03 CCCH ZF 42 68
GRMZM2G475017_P03 CCCH ZF 89 115
GRMZM2G475017_P03 CCCH ZF 133 159
GRMZM2G475017_P04 CCCH ZF 42 68

Links

Other CCCH ZF family RBPs
Other Zea mays RBPs

22 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GRMZM2G069009 Zea mays GRMZM2G069009 N 0.970
SB03G009920 Sorghum bicolor Sb03g009920 N 0.970
GRMZM2G036837 Zea mays GRMZM2G036837 N 0.926
LOC_Os01g15350 Oryza sativa LOC_Os01g15350 N 0.859
GRMZM2G086994 Zea mays GRMZM2G086994 N 0.852
BRADI2G09340 Brachypodium distachyon BRADI2G09340 N 0.830
LjSGA_129379.1 Lotus japonicus LjSGA_129379.1 N 0.815
LjSGA_017774.1 Lotus japonicus LjSGA_017774.1 N 0.815
LjSGA_036568.1 Lotus japonicus LjSGA_036568.1 N 0.815
PDK_20s1508231g002 Phoenix dactylifera PDK_20s1508231g002 N 0.778
LOC_Os01g15460 Oryza sativa LOC_Os01g15460 N 0.763
SB03G009930 Sorghum bicolor Sb03g009930 N 0.763
BRADI2G09350 Brachypodium distachyon BRADI2G09350 N 0.763
LjSGA_008412.1 Lotus japonicus LjSGA_008412.1 N 0.728
GSVIVG00017774001 Vitis vinifera GSVIVG00017774001 N 0.726
Medtr8g139290 Medicago truncatula Medtr8g139290 N 0.711
29726.m004014 Ricinus communis 29726.m004014 N 0.711
PDK_20s1443411g001 Phoenix dactylifera PDK_20s1443411g001 N 0.706
ppa005056m Prunus persica ppa005056m N 0.704
mgf002685m Mimulus guttatus mgf002685m N 0.704
cassava19141.valid.m1 Manihot esculenta cassava19141.valid.m1 N 0.704
cassava25492.m1 Manihot esculenta cassava25492.m1 N 0.704