CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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AAH72265
(
Xenopus laevis
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
AAH72265
T06695_0.6
Xenbase (2010-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
AAH72265
CCCH ZF
208
234
YKSTKCNDMRQTGYCPRGPFCAFAHVE
Links
Other
CCCH ZF
family RBPs
Other
Xenopus laevis
RBPs
10 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
XR_022366.1
Pan troglodytes
ENSPTRG00000007591
N
1.000
unkl
Xenopus tropicalis
ENSXETG00000021599
N
1.000
ENSOANG00000021809
Ornithorhynchus anatinus
ENSOANG00000021809
N
1.000
UNKL
Otolemur garnettii
ENSOGAG00000001437
N
1.000
ENSMMUG00000006693
Macaca mulatta
ENSMMUG00000006693
N
0.963
Unkl
Mus musculus
ENSMUSG00000015127
N
0.963
UNKL
Takifugu rubripes
ENSTRUG00000012086
N
0.926
UNK
Vicugna pacos
ENSVPAG00000011532
N
0.889
UNK
Tupaia belangeri
ENSTBEG00000016178
N
0.889
AAEL014545
Aedes aegypti
AAEL014545
N
0.750