ENSCPOG00000019646 (Cavia porcellus)
CCHC ZF,CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC)
PF00313 (CSD) 		IPR001878
IPR002059 		ENSCPOG00000019646 T06772_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
LIN28A
M153_0.6 		Homo sapiens YGGAGGR RNAcompete
Ray et al.(2013)
RNCMPT00162 		0.734
LIN28A
M035_0.6 		Homo sapiens HGGAGWA RNAcompete
Ray et al.(2013)
RNCMPT00036 		0.734
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCPOP00000015653 CSD 40 104
ENSCPOP00000015653 CCHC ZF 138 155
ENSCPOP00000015653 CCHC ZF 160 177
ENSCPOP00000016749 CSD 33 102
ENSCPOP00000016749 CCHC ZF 133 150
ENSCPOP00000016749 CCHC ZF 155 172

Links

Other CCHC ZF,CSD family RBPs
Other Cavia porcellus RBPs

27 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LIN28A Tursiops truncatus ENSTTRG00000005678 I 0.743
LIN28A Bos taurus ENSBTAG00000040497 I 0.743
Lin28a Mus musculus ENSMUSG00000050966 I 0.743
ENSPPYG00000001684 Pongo pygmaeus ENSPPYG00000001684 I 0.734
LIN28A Ochotona princeps ENSOPRG00000001591 I 0.734
LIN28A Pteropus vampyrus ENSPVAG00000017267 I 0.734
LIN28A Sus scrofa ENSSSCG00000003557 I 0.734
LOC100405014 Callithrix jacchus ENSCJAG00000009796 I 0.734
LIN28A Canis familiaris ENSCAFG00000012488 I 0.734
ENSOCUG00000000299 Oryctolagus cuniculus ENSOCUG00000000299 I 0.734
Lin28 Rattus norvegicus ENSRNOG00000015384 I 0.734
ENSOCUG00000027473 Oryctolagus cuniculus ENSOCUG00000027473 I 0.734
LIN28 Equus caballus ENSECAG00000020267 I 0.734
LIN28A Gorilla gorilla ENSGGOG00000024918 I 0.734
LIN28A Homo sapiens ENSG00000131914 D 0.734
LIN28A Felis catus ENSFCAG00000012810 I 0.734
LIN28A Macropus eugenii ENSMEUG00000008743 I 0.734
LIN28A Myotis lucifugus ENSMLUG00000010158 I 0.734
LIN28A Dasypus novemcinctus ENSDNOG00000010710 I 0.734
ENSCPOG00000024027 Cavia porcellus ENSCPOG00000024027 I 0.734
Ame_R001082 Ailuropoda melanoleuca Ame_R001082 I 0.725
LIN28A Loxodonta africana ENSLAFG00000017525 I 0.725
LIN28A Monodelphis domestica ENSMODG00000014236 I 0.725
XR_023903.1 Pan troglodytes ENSPTRG00000000384 I 0.725
ENSOCUG00000027786 Oryctolagus cuniculus ENSOCUG00000027786 I 0.706
LIN28A Procavia capensis ENSPCAG00000013674 I 0.706