LIN28A (Tursiops truncatus)
CCHC ZF,CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC)
PF00313 (CSD) 		IPR001878
IPR002059 		ENSTTRG00000005678 T06843_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
LIN28A
M153_0.6 		Homo sapiens YGGAGGR RNAcompete
Ray et al.(2013)
RNCMPT00162 		0.991
LIN28A
M035_0.6 		Homo sapiens HGGAGWA RNAcompete
Ray et al.(2013)
RNCMPT00036 		0.991
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTTRP00000005361 CSD 25 97
ENSTTRP00000005361 CCHC ZF 122 139
ENSTTRP00000005361 CCHC ZF 144 161

Links

Other CCHC ZF,CSD family RBPs
Other Tursiops truncatus RBPs

75 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Lin28a Mus musculus ENSMUSG00000050966 I 1.000
LIN28A Bos taurus ENSBTAG00000040497 I 1.000
LIN28A Myotis lucifugus ENSMLUG00000010158 I 0.991
LIN28A Macropus eugenii ENSMEUG00000008743 I 0.991
LIN28A Felis catus ENSFCAG00000012810 I 0.991
LIN28A Dasypus novemcinctus ENSDNOG00000010710 I 0.991
LIN28 Equus caballus ENSECAG00000020267 I 0.991
LIN28A Homo sapiens ENSG00000131914 D 0.991
ENSOCUG00000000299 Oryctolagus cuniculus ENSOCUG00000000299 I 0.991
Lin28 Rattus norvegicus ENSRNOG00000015384 I 0.991
LIN28A Sus scrofa ENSSSCG00000003557 I 0.991
LIN28A Pteropus vampyrus ENSPVAG00000017267 I 0.991
ENSPPYG00000001684 Pongo pygmaeus ENSPPYG00000001684 I 0.991
ENSOCUG00000027473 Oryctolagus cuniculus ENSOCUG00000027473 I 0.991
LIN28A Ochotona princeps ENSOPRG00000001591 I 0.991
ENSCPOG00000024027 Cavia porcellus ENSCPOG00000024027 I 0.991
LIN28A Gorilla gorilla ENSGGOG00000024918 I 0.991
LOC100405014 Callithrix jacchus ENSCJAG00000009796 I 0.991
LIN28A Canis familiaris ENSCAFG00000012488 I 0.991
LIN28A Loxodonta africana ENSLAFG00000017525 I 0.982
XR_023903.1 Pan troglodytes ENSPTRG00000000384 I 0.982
Ame_R001082 Ailuropoda melanoleuca Ame_R001082 I 0.982
LIN28A Monodelphis domestica ENSMODG00000014236 I 0.982
ENSOCUG00000027786 Oryctolagus cuniculus ENSOCUG00000027786 I 0.954
LIN28A Erinaceus europaeus ENSEEUG00000012085 I 0.936
LIN28A Procavia capensis ENSPCAG00000013674 I 0.927
LIN28A Meleagris gallopavo ENSMGAG00000009456 I 0.900
LN28A_CHICK Gallus gallus ENSGALG00000000388 I 0.900
LIN28A Takifugu rubripes ENSTRUG00000006069 I 0.899
LIN28A Gasterosteus aculeatus ENSGACG00000013893 I 0.891
LOC100406610 Callithrix jacchus ENSCJAG00000021979 I 0.891
LIN28A Oryzias latipes ENSORLG00000014369 I 0.882
LIN28A Danio rerio ENSDARG00000004328 I 0.853
lin28a Xenopus tropicalis ENSXETG00000012324 I 0.845
LIN28B Anolis carolinensis ENSACAG00000003957 I 0.836
LIN28B Erinaceus europaeus ENSEEUG00000003632 I 0.836
LIN28B Ochotona princeps ENSOPRG00000006333 I 0.827
LIN28B Tarsius syrichta ENSTSYG00000006480 I 0.827
Ame_R004947 Ailuropoda melanoleuca Ame_R004947 I 0.827
ENSPPYG00000016875 Pongo pygmaeus ENSPPYG00000016875 I 0.827
LIN28B Pteropus vampyrus ENSPVAG00000008797 I 0.827
LIN28B Pan troglodytes ENSPTRG00000018453 I 0.827
Lin28b Rattus norvegicus ENSRNOG00000025938 I 0.827
LIN28B Sorex araneus ENSSARG00000008374 I 0.827
Lin28b Mus musculus ENSMUSG00000063804 I 0.827
LIN28B Microcebus murinus ENSMICG00000002297 I 0.827
LIN28B Homo sapiens ENSG00000187772 I 0.827
LIN28B Gorilla gorilla ENSGGOG00000015437 I 0.827
LIN28B Loxodonta africana ENSLAFG00000017788 I 0.827
LOC100400137 Callithrix jacchus ENSCJAG00000001671 I 0.827
LOC100066260 Equus caballus ENSECAG00000020994 I 0.827
LIN28B Echinops telfairi ENSETEG00000015340 I 0.827
LN28B_CHICK Gallus gallus ENSGALG00000015411 I 0.826
AAI69597 Xenopus laevis AAI69597 I 0.818
LIN28B Taeniopygia guttata ENSTGUG00000012225 I 0.818
LIN28B Cavia porcellus ENSCPOG00000006178 I 0.818
lin28a Danio rerio ENSDARG00000016999 I 0.818
AAI69625 Xenopus laevis AAI69625 I 0.818
LIN28B Canis familiaris ENSCAFG00000003598 I 0.818
Q8JHC4 Xenopus laevis Q8JHC4 I 0.818
AAM77750 Xenopus laevis AAM77750 I 0.818
LIN28B Tetraodon nigroviridis ENSTNIG00000012302 I 0.817
LIN28B Meleagris gallopavo ENSMGAG00000013531 I 0.817
LIN28B Monodelphis domestica ENSMODG00000018035 I 0.809
LIN28B Dasypus novemcinctus ENSDNOG00000015300 I 0.809
LIN28B Otolemur garnettii ENSOGAG00000011042 I 0.809
LIN28B Takifugu rubripes ENSTRUG00000008428 I 0.807
LIN28B Gasterosteus aculeatus ENSGACG00000009428 I 0.807
Q8AVK2 Xenopus laevis Q8AVK2 I 0.798
AAH42225 Xenopus laevis AAH42225 I 0.798
LIN28A Gasterosteus aculeatus ENSGACG00000007826 I 0.791
LIN28B Oryzias latipes ENSORLG00000012891 I 0.789
LIN28A Takifugu rubripes ENSTRUG00000009454 I 0.764
ENSCPOG00000019646 Cavia porcellus ENSCPOG00000019646 I 0.743
LIN28A Tetraodon nigroviridis ENSTNIG00000009802 I 0.736