CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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63593
(
Helobdella robusta
)
CCHC ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1)
IPR001878
IPR000504
63593
T07493_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
63593
RRM
12
77
IYVGDLPKDATEDELESAFSTFGPIKSLWVARNPAGFAFVEFEDVRDAEDAVKTLDGSNICGGRVR
63593
CCHC ZF
112
127
DRCYECGERGHYAYDC
Links
Other
CCHC ZF,RRM
family RBPs
Other
Helobdella robusta
RBPs
2 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
estExt_Genewise1.C_1590063
Capitella teleta
estExt_Genewise1.C_1590063
I
0.747
gw1.10.611.1
Lottia gigantea
gw1.10.611.1
I
0.738