CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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e_gw.410.34.1
(
Nematostella vectensis
)
CCHC ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1)
IPR001878
IPR000504
e_gw.410.34.1
T07534_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
e_gw.410.34.1
RRM
4
69
VYIGNIGDNASKREIEREFETFGPLRDVWVARNPPGFAFCVFEDRRDAEDAVRELDGRYICGQRAR
e_gw.410.34.1
CCHC ZF
87
104
EKCYECGRVGHFARDCTR
Links
Other
CCHC ZF,RRM
family RBPs
Other
Nematostella vectensis
RBPs
3 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CPIJ013237
Culex quinquefasciatus
CPIJ013237
I
0.702
AGAP008303
Anopheles gambiae
AGAP008303
I
0.702
CpipJ_CPIJ013237
Culex pipiens
CpipJ_CPIJ013237
I
0.702