CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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estExt_fgeneshDP_pg.C_3250004
(
Dictyostelium purpureum
)
CCHC ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1)
IPR001878
IPR000504
estExt_fgeneshDP_pg.C_3250004
T07541_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_fgeneshDP_pg.C_3250004
RRM
4
66
IYIGRLSNDARREDILNRFSKFGKIDKLELRKGFCFVEYLDKNAADDAINSENKQFFLGRDIV
estExt_fgeneshDP_pg.C_3250004
CCHC ZF
83
100
GKCFFCDEEGHWARSCPN
Links
Other
CCHC ZF,RRM
family RBPs
Other
Dictyostelium purpureum
RBPs
1 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
DDB_G0284245
Dictyostelium discoideum
DDB_G0284245
N
0.778