CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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LELG_05426
(
Lodderomyces elongisporus
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
LELG_05426
T08075_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LELT_05426
CCHC ZF
264
281
GGCFKCRKTGHFARQCPM
Links
Other
CCHC ZF
family RBPs
Other
Lodderomyces elongisporus
RBPs
4 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LELG_02343
Lodderomyces elongisporus
LELG_02343
N
0.778
IGS.gm_13_00027
Chlorella NC64A
IGS.gm_13_00027
N
0.722
IGS.gm_1_00187
Chlorella NC64A
IGS.gm_1_00187
N
0.722
fgenesh3_pg.C_scaffold_13000017
Chlorella NC64A
fgenesh3_pg.C_scaffold_13000017
N
0.722