CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
PGTG_18222
(
Puccinia graminis
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
PGTG_18222
T08226_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PGTT_18222
CCHC ZF
187
204
ITCYECGKKGHKSTKCPE
Links
Other
CCHC ZF
family RBPs
Other
Puccinia graminis
RBPs
4 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PGTG_16926
Puccinia graminis
PGTG_16926
N
0.889
PGTG_16818
Puccinia graminis
PGTG_16818
N
0.889
PGTG_13838
Puccinia graminis
PGTG_13838
N
0.889
PGTG_06776
Puccinia graminis
PGTG_06776
N
0.833