CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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nasonia_NCBI_hmm24144
(
Nasonia vitripennis
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
nasonia_NCBI_hmm24144
T09082_0.6
DroSpeGe (2008-Jul-18)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
nasonia_NCBI_hmm24144
CCHC ZF
96
113
IECFKCRGKGHIARECPL
Links
Other
CCHC ZF
family RBPs
Other
Nasonia vitripennis
RBPs
23 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
nasonia_NCBI_hmm138814
Nasonia vitripennis
nasonia_NCBI_hmm138814
N
1.000
nasonia_NCBI_hmm193134
Nasonia vitripennis
nasonia_NCBI_hmm193134
N
1.000
nasonia_NCBI_hmm208854
Nasonia vitripennis
nasonia_NCBI_hmm208854
N
1.000
nasonia_NCBI_hmm116434
Nasonia vitripennis
nasonia_NCBI_hmm116434
N
1.000
nasonia_NCBI_hmm134814
Nasonia vitripennis
nasonia_NCBI_hmm134814
N
1.000
nasonia_NCBI_hmm44134
Nasonia vitripennis
nasonia_NCBI_hmm44134
N
1.000
nasonia_NCBI_hmm238214
Nasonia vitripennis
nasonia_NCBI_hmm238214
N
0.944
nasonia_NCBI_hmm241144
Nasonia vitripennis
nasonia_NCBI_hmm241144
N
0.944
nasonia_NCBI_hmm78354
Nasonia vitripennis
nasonia_NCBI_hmm78354
N
0.889
nasonia_NCBI_hmm218524
Nasonia vitripennis
nasonia_NCBI_hmm218524
N
0.889
nasonia_NCBI_hmm178284
Nasonia vitripennis
nasonia_NCBI_hmm178284
N
0.833
nasonia_NCBI_hmm96214
Nasonia vitripennis
nasonia_NCBI_hmm96214
N
0.778
nasonia_NCBI_hmm319044
Nasonia vitripennis
nasonia_NCBI_hmm319044
N
0.778
nasonia_NCBI_hmm216504
Nasonia vitripennis
nasonia_NCBI_hmm216504
N
0.722
ppa024147m
Prunus persica
ppa024147m
N
0.722
Glyma19g02820.1
Glycine max
Glyma19g02820.1
N
0.722
Glyma03g10310.1
Glycine max
Glyma03g10310.1
N
0.722
LOC_Os05g17830
Oryza sativa
LOC_Os05g17830
N
0.722
nasonia_NCBI_hmm129024
Nasonia vitripennis
nasonia_NCBI_hmm129024
N
0.722
fgenesh1_pg.C_scaffold_141000002
Daphnia pulex
fgenesh1_pg.C_scaffold_141000002
N
0.722
nasonia_NCBI_hmm16014
Nasonia vitripennis
nasonia_NCBI_hmm16014
N
0.722
nasonia_NCBI_hmm168354
Nasonia vitripennis
nasonia_NCBI_hmm168354
N
0.722
nasonia_NCBI_hmm135244
Nasonia vitripennis
nasonia_NCBI_hmm135244
N
0.722