CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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nasonia_NCBI_hmm129024
(
Nasonia vitripennis
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
nasonia_NCBI_hmm129024
T08987_0.6
DroSpeGe (2008-Jul-18)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
nasonia_NCBI_hmm129024
CCHC ZF
229
246
VKCFKCHGKGHLARECPS
Links
Other
CCHC ZF
family RBPs
Other
Nasonia vitripennis
RBPs
22 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
nasonia_NCBI_hmm168354
Nasonia vitripennis
nasonia_NCBI_hmm168354
N
0.778
nasonia_NCBI_hmm16014
Nasonia vitripennis
nasonia_NCBI_hmm16014
N
0.778
nasonia_NCBI_hmm241144
Nasonia vitripennis
nasonia_NCBI_hmm241144
N
0.778
nasonia_NCBI_hmm135244
Nasonia vitripennis
nasonia_NCBI_hmm135244
N
0.778
CRE11513
Caenorhabditis remanei
CRE11513
N
0.722
CRE02519
Caenorhabditis remanei
CRE02519
N
0.722
AT3G32895
Arabidopsis thaliana
AT3G32895-TAIR-G
N
0.722
cassava9549.m1
Manihot esculenta
cassava9549.m1
N
0.722
fgenesh1_pg.C_scaffold_17000047
Phanerochaete chrysosporium
fgenesh1_pg.C_scaffold_17000047
N
0.722
nasonia_NCBI_hmm116434
Nasonia vitripennis
nasonia_NCBI_hmm116434
N
0.722
fgenesh1_pg.C_scaffold_40000002
Phanerochaete chrysosporium
fgenesh1_pg.C_scaffold_40000002
N
0.722
nasonia_NCBI_hmm96214
Nasonia vitripennis
nasonia_NCBI_hmm96214
N
0.722
fgenesh1_pg.C_scaffold_141000002
Daphnia pulex
fgenesh1_pg.C_scaffold_141000002
N
0.722
nasonia_NCBI_hmm44134
Nasonia vitripennis
nasonia_NCBI_hmm44134
N
0.722
nasonia_NCBI_hmm193134
Nasonia vitripennis
nasonia_NCBI_hmm193134
N
0.722
nasonia_NCBI_hmm18374
Nasonia vitripennis
nasonia_NCBI_hmm18374
N
0.722
nasonia_NCBI_hmm171074
Nasonia vitripennis
nasonia_NCBI_hmm171074
N
0.722
nasonia_NCBI_hmm208854
Nasonia vitripennis
nasonia_NCBI_hmm208854
N
0.722
nasonia_NCBI_hmm216504
Nasonia vitripennis
nasonia_NCBI_hmm216504
N
0.722
nasonia_NCBI_hmm24144
Nasonia vitripennis
nasonia_NCBI_hmm24144
N
0.722
nasonia_NCBI_hmm134814
Nasonia vitripennis
nasonia_NCBI_hmm134814
N
0.722
nasonia_NCBI_hmm138814
Nasonia vitripennis
nasonia_NCBI_hmm138814
N
0.722