CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
nasonia_NCBI_hmm54844
(
Nasonia vitripennis
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
nasonia_NCBI_hmm54844
T09199_0.6
DroSpeGe (2008-Jul-18)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
nasonia_NCBI_hmm54844
CCHC ZF
175
192
TKCFNCGEYGHLGCDCPR
Links
Other
CCHC ZF
family RBPs
Other
Nasonia vitripennis
RBPs
9 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
nasonia_NCBI_hmm412904
Nasonia vitripennis
nasonia_NCBI_hmm412904
N
0.889
nasonia_NCBI_hmm38614
Nasonia vitripennis
nasonia_NCBI_hmm38614
N
0.889
nasonia_NCBI_hmm259264
Nasonia vitripennis
nasonia_NCBI_hmm259264
N
0.889
nasonia_NCBI_hmm18164
Nasonia vitripennis
nasonia_NCBI_hmm18164
N
0.889
nasonia_NCBI_hmm126404
Nasonia vitripennis
nasonia_NCBI_hmm126404
N
0.833
nasonia_NCBI_hmm35024
Nasonia vitripennis
nasonia_NCBI_hmm35024
N
0.833
nasonia_NCBI_hmm32514
Nasonia vitripennis
nasonia_NCBI_hmm32514
N
0.833
nasonia_NCBI_hmm234754
Nasonia vitripennis
nasonia_NCBI_hmm234754
N
0.833
LOC_Os04g30440
Oryza sativa
LOC_Os04g30440
N
0.722