CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
nasonia_NCBI_hmm412904
(
Nasonia vitripennis
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
nasonia_NCBI_hmm412904
T09178_0.6
DroSpeGe (2008-Jul-18)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
nasonia_NCBI_hmm412904
CCHC ZF
464
481
TKCFNCDEYGHLGRDCPR
Links
Other
CCHC ZF
family RBPs
Other
Nasonia vitripennis
RBPs
10 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
nasonia_NCBI_hmm38614
Nasonia vitripennis
nasonia_NCBI_hmm38614
N
1.000
nasonia_NCBI_hmm259264
Nasonia vitripennis
nasonia_NCBI_hmm259264
N
1.000
nasonia_NCBI_hmm18164
Nasonia vitripennis
nasonia_NCBI_hmm18164
N
1.000
nasonia_NCBI_hmm32514
Nasonia vitripennis
nasonia_NCBI_hmm32514
N
0.944
nasonia_NCBI_hmm35024
Nasonia vitripennis
nasonia_NCBI_hmm35024
N
0.944
nasonia_NCBI_hmm126404
Nasonia vitripennis
nasonia_NCBI_hmm126404
N
0.944
nasonia_NCBI_hmm234754
Nasonia vitripennis
nasonia_NCBI_hmm234754
N
0.944
nasonia_NCBI_hmm54844
Nasonia vitripennis
nasonia_NCBI_hmm54844
N
0.889
LOC_Os09g02960
Oryza sativa
LOC_Os09g02960
N
0.722
fgenesh2_pg.2_#_644
Fragilariopsis cylindrus
fgenesh2_pg.2_#_644
N
0.722