CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GSVIVG00021646001
(
Vitis vinifera
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
GSVIVG00021646001
T10660_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
GSVIVT00021646001
CCHC ZF
281
298
EKCFFCKKKGHVKKKCLK
Links
Other
CCHC ZF
family RBPs
Other
Vitis vinifera
RBPs
6 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Glyma13g21780.1
Glycine max
Glyma13g21780.1
N
0.778
Glyma02g36930.1
Glycine max
Glyma02g36930.1
N
0.778
CpipJ_CPIJ009289
Culex pipiens
CpipJ_CPIJ009289
N
0.722
Glyma08g24230.1
Glycine max
Glyma08g24230.1
N
0.722
LOC_Os03g20930
Oryza sativa
LOC_Os03g20930
N
0.722
Glyma11g04990.1
Glycine max
Glyma11g04990.1
N
0.722