CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Glyma11g04990.1
(
Glycine max
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
Glyma11g04990.1
T14514_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Glyma11g04990.1
CCHC ZF
266
283
AKCFFCKKKGHMKKNCPG
Links
Other
CCHC ZF
family RBPs
Other
Glycine max
RBPs
4 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Glyma13g21780.1
Glycine max
Glyma13g21780.1
N
0.833
Glyma02g36930.1
Glycine max
Glyma02g36930.1
N
0.833
CpipJ_CPIJ009289
Culex pipiens
CpipJ_CPIJ009289
N
0.722
GSVIVG00021646001
Vitis vinifera
GSVIVG00021646001
N
0.722