CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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160995
(
Helobdella robusta
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
160995
T13122_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
160995
CCHC ZF
422
439
LQCWICGEKGHLRRDCKH
Links
Other
CCHC ZF
family RBPs
Other
Helobdella robusta
RBPs
26 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
180906
Helobdella robusta
180906
N
0.944
182469
Helobdella robusta
182469
N
0.944
174236
Helobdella robusta
174236
N
0.944
176092
Helobdella robusta
176092
N
0.944
177499
Helobdella robusta
177499
N
0.944
180343
Helobdella robusta
180343
N
0.944
179452
Helobdella robusta
179452
N
0.944
169322
Helobdella robusta
169322
N
0.944
169254
Helobdella robusta
169254
N
0.944
183398
Helobdella robusta
183398
N
0.944
184581
Helobdella robusta
184581
N
0.944
180381
Helobdella robusta
180381
N
0.944
163780
Helobdella robusta
163780
N
0.944
182523
Helobdella robusta
182523
N
0.944
166051
Helobdella robusta
166051
N
0.944
184400
Helobdella robusta
184400
N
0.889
184490
Helobdella robusta
184490
N
0.889
175920
Helobdella robusta
175920
N
0.889
162956
Helobdella robusta
162956
N
0.889
161499
Helobdella robusta
161499
N
0.889
163701
Helobdella robusta
163701
N
0.889
164998
Helobdella robusta
164998
N
0.889
161475
Helobdella robusta
161475
N
0.889
174284
Helobdella robusta
174284
N
0.889
161590
Helobdella robusta
161590
N
0.833
182130
Helobdella robusta
182130
N
0.778