CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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estExt_fgenesh2_pg.C_50170
(
Neurospora discreta
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
estExt_fgenesh2_pg.C_50170
T13620_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_fgenesh2_pg.C_50170
CCHC ZF
277
293
GACHTCGQNGHRAADCA
Links
Other
CCHC ZF
family RBPs
Other
Neurospora discreta
RBPs
4 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
fgenesh1_pg.C_scaffold_3000233
Neurospora tetrasperma
fgenesh1_pg.C_scaffold_3000233
N
0.889
NCU00483
Neurospora crassa
NCU00483
N
0.833
BRADI1G03180
Brachypodium distachyon
BRADI1G03180
N
0.722
XRN2
Arabidopsis thaliana
AT5G42540-TAIR-G
N
0.706