XRN2 (Arabidopsis thaliana)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 AT5G42540-TAIR-G T09423_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
AT5G42540.1-P CCHC ZF 264 279

Links

Other CCHC ZF family RBPs
Other Arabidopsis thaliana RBPs

36 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002865463.1 Arabidopsis lyrata scaffold_800897.1 N 0.875
cassava11147.m1 Manihot esculenta cassava11147.m1 N 0.812
cassava11146.m1 Manihot esculenta cassava11146.m1 N 0.812
cassava11145.m1 Manihot esculenta cassava11145.m1 N 0.812
cassava11148.m1 Manihot esculenta cassava11148.m1 N 0.812
cassava11150.m1 Manihot esculenta cassava11150.m1 N 0.812
Cucsa.033870 Cucumis sativus Cucsa.033870 N 0.812
cassava6289.valid.m1 Manihot esculenta cassava6289.valid.m1 N 0.812
cassava6288.valid.m1 Manihot esculenta cassava6288.valid.m1 N 0.812
cassava6287.valid.m1 Manihot esculenta cassava6287.valid.m1 N 0.812
cassava11144.m1 Manihot esculenta cassava11144.m1 N 0.812
cassava11149.m1 Manihot esculenta cassava11149.m1 N 0.812
B9GQW8_POPTR Populus trichocarpa POPTR_0002s02570 N 0.812
30170.m014167 Ricinus communis 30170.m014167 N 0.812
cassava11143.m1 Manihot esculenta cassava11143.m1 N 0.812
cassava11141.m1 Manihot esculenta cassava11141.m1 N 0.812
cassava11142.m1 Manihot esculenta cassava11142.m1 N 0.812
Glyma17g37650.1 Glycine max Glyma17g37650.1 N 0.750
Glyma14g40510.1 Glycine max Glyma14g40510.1 N 0.750
ppa000605m Prunus persica ppa000605m N 0.750
mgf002253m Mimulus guttatus mgf002253m N 0.750
GRMZM2G064868 Zea mays GRMZM2G064868 N 0.750
Medtr4g079110 Medicago truncatula Medtr4g079110 N 0.750
GRMZM2G121404 Zea mays GRMZM2G121404 N 0.750
PK11796.1 Cannabis sativa PK11796.1 N 0.750
BGIOSIBCE004440 Oryza indica BGIOSIBCE004440 N 0.750
SB07G005160 Sorghum bicolor Sb07g005160 N 0.750
SB03G010040 Sorghum bicolor Sb03g010040 N 0.750
LOC_Os01g65220 Oryza sativa LOC_Os01g65220 N 0.750
BRADI2G56440 Brachypodium distachyon BRADI2G56440 N 0.750
GSVIVG00009879001 Vitis vinifera GSVIVG00009879001 N 0.750
PDK_20s1898261g001 Phoenix dactylifera PDK_20s1898261g001 N 0.722
Glyma10g30150.1 Glycine max Glyma10g30150.1 N 0.722
Glyma20g37260.1 Glycine max Glyma20g37260.1 N 0.722
PDK_20s1387941g001 Phoenix dactylifera PDK_20s1387941g001 N 0.722
estExt_fgenesh2_pg.C_50170 Neurospora discreta estExt_fgenesh2_pg.C_50170 N 0.706