CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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estExt_fgenesh3_pg.C_320041
(
Postia placenta
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
estExt_fgenesh3_pg.C_320041
T13632_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_fgenesh3_pg.C_320041
CCHC ZF
664
681
GKCFECQEVGHLARNCPR
Links
Other
CCHC ZF
family RBPs
Other
Postia placenta
RBPs
5 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LOC_Os03g16420
Oryza sativa
LOC_Os03g16420
N
0.778
nasonia_NCBI_hmm126404
Nasonia vitripennis
nasonia_NCBI_hmm126404
N
0.722
SJAG_05118
Schizosaccharomyces japonicus
SJAG_05118
N
0.722
CPSG_04175
Coccidioides posadasii
CPSG_04175
N
0.722
CIMG_13627
Coccidioides immitis
CIMG_13627
N
0.722