CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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estExt_fgenesh3_pg.C_50128
(
Chlorella NC64A
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
estExt_fgenesh3_pg.C_50128
T13633_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_fgenesh3_pg.C_50128
CCHC ZF
167
184
LRCFKCGGKGHFARDCMA
Links
Other
CCHC ZF
family RBPs
Other
Chlorella NC64A
RBPs
3 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ANIA_02865
Aspergillus nidulans
CADANIAG00010225
N
0.778
estExt_fgenesh2_pg.C_580006
Melampsora laricis populina
estExt_fgenesh2_pg.C_580006
N
0.722
IGS.gm_4_00561
Chlorella NC64A
IGS.gm_4_00561
N
0.722