CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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EuGene.0000080351
(
Micromonas pusilla
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
EuGene.0000080351
T13682_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
EuGene.0000080351
CCHC ZF
23
38
RACFKCGKTGHWSRDC
Links
Other
CCHC ZF
family RBPs
Other
Micromonas pusilla
RBPs
3 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Cucsa.132860
Cucumis sativus
Cucsa.132860
N
0.722
Glyma11g10610.1
Glycine max
Glyma11g10610.1
N
0.706
fgenesh2_pg.C_scaffold_80000055
Selaginella moellendorfii
fgenesh2_pg.C_scaffold_80000055
N
0.706