fgenesh2_pg.C_scaffold_80000055 (Selaginella moellendorfii)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 fgenesh2_pg.C_scaffold_80000055 T14223_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_pg.C_scaffold_80000055 CCHC ZF 6 22

Links

Other CCHC ZF family RBPs
Other Selaginella moellendorfii RBPs

28 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Medtr4g100980 Medicago truncatula Medtr4g100980 N 0.882
Glyma12g02890.1 Glycine max Glyma12g02890.1 N 0.882
PK15492.1 Cannabis sativa PK15492.1 N 0.833
29801.m003231 Ricinus communis 29801.m003231 N 0.833
B9HVL9_POPTR Populus trichocarpa POPTR_0010s10750 N 0.833
GSVIVG00010231001 Vitis vinifera GSVIVG00010231001 N 0.833
ppa009221m Prunus persica ppa009221m N 0.833
BGIOSIBCE008748 Oryza indica BGIOSIBCE008748 N 0.833
MDP0000284515 Malus x domestica MDP0000284515 N 0.833
LOC_Os02g52460 Oryza sativa LOC_Os02g52460 N 0.833
LjT04D09.40.nd Lotus japonicus LjT04D09.40.nd N 0.833
mgf001569m Mimulus guttatus mgf001569m N 0.833
MDP0000277069 Malus x domestica MDP0000277069 N 0.833
cassava11257.m1 Manihot esculenta cassava11257.m1 N 0.833
Glyma11g10610.1 Glycine max Glyma11g10610.1 N 0.824
estExt_fgenesh1_pg.C_5350001 Physcomitrella patens estExt_fgenesh1_pg.C_5350001 N 0.778
XM_002882206.1 Arabidopsis lyrata scaffold_300229.1 N 0.778
SB10G031080 Sorghum bicolor Sb10g031080 N 0.778
AT3G02820 Arabidopsis thaliana AT3G02820-TAIR-G N 0.778
BRADI1G32480 Brachypodium distachyon BRADI1G32480 N 0.778
GRMZM2G057571 Zea mays GRMZM2G057571 N 0.778
BRADI1G29530 Brachypodium distachyon BRADI1G29530 N 0.778
IGS.gm_7_00451 Chlorella NC64A IGS.gm_7_00451 N 0.722
e_gw1.4.899.1 Ostreococcus RCC809 e_gw1.4.899.1 N 0.722
Cucsa.132860 Cucumis sativus Cucsa.132860 N 0.722
XP_001189485.1 Strongylocentrotus purpuratus XP_001189485.1 N 0.722
XP_001188524.1 Strongylocentrotus purpuratus XP_001188524.1 N 0.722
EuGene.0000080351 Micromonas pusilla EuGene.0000080351 N 0.706