CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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fgenesh1_pg.C_scaffold_12000356
(
Daphnia pulex
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
fgenesh1_pg.C_scaffold_12000356
T13741_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh1_pg.C_scaffold_12000356
CCHC ZF
811
828
LICFSCGVEGHVKNNCPV
fgenesh1_pg.C_scaffold_12000356
CCHC ZF
877
894
PICYNCRGIGHKSFECQM
Links
Other
CCHC ZF
family RBPs
Other
Daphnia pulex
RBPs
6 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
fgenesh1_pg.C_scaffold_44000024
Daphnia pulex
fgenesh1_pg.C_scaffold_44000024
N
0.972
fgenesh1_pg.C_scaffold_1354000001
Daphnia pulex
fgenesh1_pg.C_scaffold_1354000001
N
0.972
fgenesh1_pg.C_scaffold_22000138
Daphnia pulex
fgenesh1_pg.C_scaffold_22000138
N
0.972
fgenesh1_pg.C_scaffold_201000018
Daphnia pulex
fgenesh1_pg.C_scaffold_201000018
N
0.944
fgenesh1_pg.C_scaffold_45000040
Daphnia pulex
fgenesh1_pg.C_scaffold_45000040
N
0.778
fgenesh1_pg.C_scaffold_270000009
Daphnia pulex
fgenesh1_pg.C_scaffold_270000009
N
0.750