fgenesh1_pg.C_scaffold_22000138 (Daphnia pulex)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 fgenesh1_pg.C_scaffold_22000138 T13856_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.C_scaffold_22000138 CCHC ZF 958 975
fgenesh1_pg.C_scaffold_22000138 CCHC ZF 1024 1041

Links

Other CCHC ZF family RBPs
Other Daphnia pulex RBPs

6 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
fgenesh1_pg.C_scaffold_12000356 Daphnia pulex fgenesh1_pg.C_scaffold_12000356 N 0.972
fgenesh1_pg.C_scaffold_201000018 Daphnia pulex fgenesh1_pg.C_scaffold_201000018 N 0.972
fgenesh1_pg.C_scaffold_44000024 Daphnia pulex fgenesh1_pg.C_scaffold_44000024 N 0.944
fgenesh1_pg.C_scaffold_1354000001 Daphnia pulex fgenesh1_pg.C_scaffold_1354000001 N 0.944
fgenesh1_pg.C_scaffold_45000040 Daphnia pulex fgenesh1_pg.C_scaffold_45000040 N 0.778
fgenesh1_pg.C_scaffold_270000009 Daphnia pulex fgenesh1_pg.C_scaffold_270000009 N 0.750