CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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fgenesh3_pg.112__20
(
Postia placenta
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
fgenesh3_pg.112__20
T14257_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh3_pg.112__20
CCHC ZF
763
780
GKCFGCRQPGHLSRNCPE
Links
Other
CCHC ZF
family RBPs
Other
Postia placenta
RBPs
10 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
fgenesh3_pg.131__17
Postia placenta
fgenesh3_pg.131__17
N
0.833
fgenesh2_pg.1_#_223
Serpula lacrymans
fgenesh2_pg.1_#_223
N
0.778
180025
Helobdella robusta
180025
N
0.722
Cucsa.365550
Cucumis sativus
Cucsa.365550
N
0.722
173198
Helobdella robusta
173198
N
0.722
184139
Helobdella robusta
184139
N
0.722
170151
Helobdella robusta
170151
N
0.722
CIMG_13627
Coccidioides immitis
CIMG_13627
N
0.722
CPSG_04175
Coccidioides posadasii
CPSG_04175
N
0.722
171304
Helobdella robusta
171304
N
0.722