CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Glyma05g01960.1
(
Glycine max
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
Glyma05g01960.1
T14491_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Glyma05g01960.1
CCHC ZF
107
124
IQCFNCQKFGHFADECYS
Links
Other
CCHC ZF
family RBPs
Other
Glycine max
RBPs
3 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Glyma02g37220.1
Glycine max
Glyma02g37220.1
N
0.722
Glyma02g14000.1
Glycine max
Glyma02g14000.1
N
0.722
fgenesh1_pg.C_scaffold_9000406
Phanerochaete chrysosporium
fgenesh1_pg.C_scaffold_9000406
N
0.722