CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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NCBI_GNO_20300016
(
Daphnia pulex
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
NCBI_GNO_20300016
T14697_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
NCBI_GNO_20300016
CCHC ZF
241
258
PTCFKCHQAGHIARDCPS
Links
Other
CCHC ZF
family RBPs
Other
Daphnia pulex
RBPs
10 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
SNAP_00036164
Daphnia pulex
SNAP_00036164
N
1.000
fgenesh1_pg.C_scaffold_151000003
Daphnia pulex
fgenesh1_pg.C_scaffold_151000003
N
0.778
fgenesh1_pg.C_scaffold_2090000001
Daphnia pulex
fgenesh1_pg.C_scaffold_2090000001
N
0.778
fgenesh1_pg.C_scaffold_38000004
Daphnia pulex
fgenesh1_pg.C_scaffold_38000004
N
0.778
SNAP_00036952
Daphnia pulex
SNAP_00036952
N
0.778
Aqu1.204527
Amphimedon queenslandica
Aqu1.204527
N
0.722
LOC_Os07g03390
Oryza sativa
LOC_Os07g03390
N
0.722
nasonia_NCBI_hmm80794
Nasonia vitripennis
nasonia_NCBI_hmm80794
N
0.722
LOC_Os07g03297
Oryza sativa
LOC_Os07g03297
N
0.722
LOC_Os07g03476
Oryza sativa
LOC_Os07g03476
N
0.722