NCBI_GNO_20300016 (Daphnia pulex)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 NCBI_GNO_20300016 T14697_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
NCBI_GNO_20300016 CCHC ZF 241 258

Links

Other CCHC ZF family RBPs
Other Daphnia pulex RBPs

10 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SNAP_00036164 Daphnia pulex SNAP_00036164 N 1.000
fgenesh1_pg.C_scaffold_151000003 Daphnia pulex fgenesh1_pg.C_scaffold_151000003 N 0.778
fgenesh1_pg.C_scaffold_2090000001 Daphnia pulex fgenesh1_pg.C_scaffold_2090000001 N 0.778
fgenesh1_pg.C_scaffold_38000004 Daphnia pulex fgenesh1_pg.C_scaffold_38000004 N 0.778
SNAP_00036952 Daphnia pulex SNAP_00036952 N 0.778
Aqu1.204527 Amphimedon queenslandica Aqu1.204527 N 0.722
LOC_Os07g03390 Oryza sativa LOC_Os07g03390 N 0.722
nasonia_NCBI_hmm80794 Nasonia vitripennis nasonia_NCBI_hmm80794 N 0.722
LOC_Os07g03297 Oryza sativa LOC_Os07g03297 N 0.722
LOC_Os07g03476 Oryza sativa LOC_Os07g03476 N 0.722